Assemblies of G. hirsutum and G. barbadense have been updated:
Assemblies of G. hirsutum (A1D1) and G. barbadense (A2D2) have been updated to
HAU and ZJU.
The original JGI and NAU assembly would still be available within three years
You can use the Genome Assembly Coordinates Conversion Tool to convert coordinates from the old to the new one.