Data Download

Genome Assembly Sequence (FASTA Format)

SpeciesChromosome Number ( + Scaffolds)File NameFile SizeMD5SUM
Gossypium arboreum, BGI 13 + 75,581 genome.Garb.BGI.fa.gz 456 MB a66bc3563e8880af89ae2e0d57fbb0a3
Gossypium raimondii, JGI 13 + 1,020 genome.Grai.JGI.fa.gz 217 MB 4ef997d70cd0c958b3de843603394559
Gossypium raimondii, BGI 13 + 4,434 genome.Grai.BGI.fa.gz 216 MB e06d0761e7fa6e9d086c2fef8fe088ad
Gossypium hirsutum, NAU 26 + 38,951 genome.Ghir.NAU.fa.gz 613 MB 652f685df812f73b64b026b2d2cb27a1
Gossypium hirsutum, BGI 26 + 9,128 genome.Ghir.BGI.fa.gz 612 MB 991d3d4828345314b23fcbf285a327a0
Gossypium barbadense, NAU 26 + 2,013 genome.Gbar.NAU.fa.gz 585 MB e0d591a3d8e5c800ef2d7900014d2b32

Repeat Elements

SpeciesData TypeFile NameFile SizeMD5SUM
Gossypium arboreum, BGI repeat elements annotation (GFF3 format) repeat.Garb.BGI.gff3.gz 67 MB edc4e0d134293bce2f032c4ef2aea2e3
Gossypium raimondii, JGI repeat elements annotation (GFF3 format) repeat.Grai.JGI.gff3.gz 25 MB 673a26282f7f8da69e95d48ca16c23c5
Gossypium raimondii, BGI repeat elements annotation (GFF3 format) repeat.Grai.BGI.gff3.gz 26 MB 0a735885ab00084e2847cc47bac216cd
Gossypium hirsutum, NAU repeat elements annotation (GFF3 format) repeat.Ghir.NAU.gff3.gz 92 MB a88fe29877402fd64ad7f5861925a026
Gossypium hirsutum, BGI repeat elements annotation (GFF3 format) repeat.Ghir.BGI.gff3.gz 79 MB 02960f6e3b1e6c40d9fb54f0428bdb1a
Gossypium barbadense, NAU repeat elements annotation (GFF3 format) repeat.Gbar.NAU.gff3.gz 79 MB f4666403bf832fccab0f350b57b53440
 
Gossypium arboreum, BGI soft-masked genome sequence (FASTA format) genome.Garb.BGI.softmask.fa.gz 470 MB 8673ff406eb7bae9677170760b03a0da
Gossypium raimondii, JGI soft-masked genome sequence (FASTA format) genome.Grai.JGI.softmask.fa.gz 230 MB 7d664a7aa981e9253cc6e1759cb38b93
Gossypium raimondii, BGI soft-masked genome sequence (FASTA format) genome.Grai.BGI.softmask.fa.gz 225 MB cf2da801562f3b87a2e4ecae7d11cdf8
Gossypium hirsutum, NAU soft-masked genome sequence (FASTA format) genome.Ghir.NAU.softmask.fa.gz 636 MB 678d667162f1b7575fdb809213a16b41
Gossypium hirsutum, BGI soft-masked genome sequence (FASTA format) genome.Ghir.BGI.softmask.fa.gz 633 MB 25d10002d66bf805fb198c8eed17d062
Gossypium barbadense, NAU soft-masked genome sequence (FASTA format) genome.Gbar.NAU.softmask.fa.gz 608 MB efba5491aabc5d9955810ed56ee1cf9f

Gene Annotation (GFF3 Format)

SpeciesGene NumberFile NameFile SizeMD5SUM
Gossypium arboreum, BGI 41,331 gene.Garb.BGI.gff3.gz 3.3 MB 503cbb3ef2a4b7d223032ab2664bd721
Gossypium raimondii, JGI 37,505 gene.Grai.JGI.gff3.gz 9.2 MB a282af896a3da97664ec24e116a4f02b
Gossypium raimondii, BGI 40,976 gene.Grai.BGI.gff3.gz 3.5 MB dfc1f24ab949efa19d0bceecea79e3e3
Gossypium hirsutum, NAU 70,478 gene.Ghir.NAU.gff3.gz 8.8 MB 51e2a14091c2b0a1a84d28217a8f2c23
Gossypium hirsutum, BGI 76,943 gene.Ghir.BGI.gff3.gz 5.9 MB ee6deecc6ee68942497c7899154a67b6
Gossypium barbadense, NAU 77,358 gene.Gbar.NAU.gff3.gz 6.3 MB 14e870cc9365a757fcc581216f7fabfe

Gene, Transcript, CDS and Protein Sequences (FASTA Format)

SpeciesData TypeFile NameFile SizeMD5SUM
Gossypium arboreum, BGI gene sequence gene.seq.Garb.BGI.fa.gz 33 MB fe8d5823e7bbce91d262c4547c35774b
Gossypium raimondii, JGI gene sequence gene.seq.Grai.JGI.fa.gz 38 MB ad14936a467c96b61ef0f16831963677
Gossypium raimondii, BGI gene sequence gene.seq.Grai.BGI.fa.gz 32 MB aa4e8ebdb52cc5df4b01d5410c08c5b9
Gossypium hirsutum, NAU gene sequence gene.seq.Ghir.NAU.fa.gz 67 MB 9841c786474aebc5d3eb0deb288a5e51
Gossypium hirsutum, BGI gene sequence gene.seq.Ghir.BGI.fa.gz 53 MB 870a4ab5906d06d3c795102f8631d135
Gossypium barbadense, NAU gene sequence gene.seq.Gbar.NAU.fa.gz 64 MB 2316804b88f56af9d6158a1d5e6ac721
 
Gossypium arboreum, BGI principle transcript sequence transcript.seq.Garb.BGI.fa.gz 17 MB 6a39749f1b334699898638e1e7807dba
Gossypium raimondii, JGI principle transcript sequence transcript.seq.Grai.JGI.fa.gz 20 MB 2665cf2aef680dd00d980c7f0ca12ac6
Gossypium raimondii, BGI principle transcript sequence transcript.seq.Grai.BGI.fa.gz 18 MB 5955ddd107733e60b94a7c615e4d2a14
Gossypium hirsutum, NAU principle transcript sequence transcript.seq.Ghir.NAU.fa.gz 28 MB 3e21e2dc747fb88d3832b49e5a1a98a9
Gossypium hirsutum, BGI principle transcript sequence transcript.seq.Ghir.BGI.fa.gz 27 MB 7d919b63c714c716aee3706228dd657f
Gossypium barbadense, NAU principle transcript sequence transcript.seq.Gbar.NAU.fa.gz 29 MB 9de9d7abc54089feb2deb553f226049f
 
Gossypium arboreum, BGI CDS sequence CDS.seq.Garb.BGI.fa.gz 15 MB 435e2a0a8f62c8cc41fbfd2732f6663b
Gossypium raimondii, JGI CDS sequence CDS.seq.Grai.JGI.fa.gz 15 MB efb827dea68c47ad6002dc61f48308aa
Gossypium raimondii, BGI CDS sequence CDS.seq.Grai.BGI.fa.gz 15 MB 78101a2ab34978f0fe7c0734cd2d1d2f
Gossypium hirsutum, NAU CDS sequence CDS.seq.Ghir.NAU.fa.gz 28 MB a518faec1389991e9c1c2ef40de10469
Gossypium hirsutum, BGI CDS sequence CDS.seq.Ghir.BGI.fa.gz 27 MB b182fcdeae8b970f1a934290f85a6dd3
Gossypium barbadense, NAU CDS sequence CDS.seq.Gbar.NAU.fa.gz 29 MB 9e09062da14f7669d416dfa357bea330
 
Gossypium arboreum, BGI protein sequence protein.seq.Garb.BGI.fa.gz 9.9 MB 5e6126b5944c87f30b73c847c6b6c1f8
Gossypium raimondii, JGI protein sequence protein.seq.Grai.JGI.fa.gz 11 MB 994e7c5321deafc59427d7f1813e2792
Gossypium raimondii, BGI protein sequence protein.seq.Grai.BGI.fa.gz 9.9 MB c97fb8c80f3609b2e052497bc9d163e8
Gossypium hirsutum, NAU protein sequence protein.seq.Ghir.NAU.fa.gz 19 MB d67e5a94004d2374fe242a3880a875e7
Gossypium hirsutum, BGI protein sequence protein.seq.Ghir.BGI.fa.gz 18 MB 5a95e565555473a23473d37f766f3972
Gossypium barbadense, NAU protein sequence protein.seq.Gbar.NAU.fa.gz 20 MB 75d5e9d8ae3baee455c56746a9d2420e

Protein Statistics (Tab-delimited Table)

SpeciesProtein NumberFile NameFile SizeMD5SUM
Gossypium arboreum, BGI 41,331 protein.statistics.Garb.BGI.txt.gz 915 KB 3eacc21168fd704c4d6b14ebd6607408
Gossypium raimondii, JGI 37,505 protein.statistics.Grai.JGI.txt.gz 856 KB c2cd4e3f230b768a6e1b12d83561bb5b
Gossypium raimondii, BGI 40,976 protein.statistics.Grai.BGI.txt.gz 932 KB 7b381ef538a9681ee28b0e37a102455f
Gossypium hirsutum, NAU 70,478 protein.statistics.Ghir.NAU.txt.gz 1.6 MB cf7ef6846c74a8c86a252d9b50458168
Gossypium hirsutum, BGI 76,943 protein.statistics.Ghir.BGI.txt.gz 1.7 MB 428a1c2135f906a09743445502266deb
Gossypium barbadense, NAU 77,358 protein.statistics.Gbar.NAU.txt.gz 1.7 MB 6878e6ec680264288b952012c027d45b

Gene Function (Tab-delimited Table)

SpeciesData TypeFile NameFile SizeMD5SUM
Gossypium arboreum, BGI protein domain domain.Garb.BGI.txt.gz 3.8 MB 61c8e711395b1768333732b34cbcd918
Gossypium raimondii, JGI protein domain domain.Grai.JGI.txt.gz 4.0 MB 0e4308ce3343e498adcf82daa8bab13d
Gossypium raimondii, BGI protein domain domain.Grai.BGI.txt.gz 3.9 MB fef6364e7dff2fef58d0a9cc692e7b5a
Gossypium hirsutum, NAU protein domain domain.Ghir.NAU.txt.gz 7.1 MB e16a13f139124c4ba7b66a31fec5c7c6
Gossypium hirsutum, BGI protein domain domain.Ghir.BGI.txt.gz 6.6 MB 3c917c830de21b6c7eb7e1c740841744
Gossypium barbadense, NAU protein domain domain.Gbar.NAU.txt.gz 7.1 MB 94c646cef6b619f483483614840dbe8a
     
Gossypium arboreum, BGI Gene Ontology GO.Garb.BGI.txt.gz 267 KB 24fda22032cbf71bbdc5ed30183dda71
Gossypium raimondii, JGI Gene Ontology GO.Grai.JGI.txt.gz 275 KB 66f3fa0e600d3b68bcfe4e7725ca8cf7
Gossypium raimondii, BGI Gene Ontology GO.Grai.BGI.txt.gz 266 KB d3c4f9d7aba0b02bb919614fd260d8ed
Gossypium hirsutum, NAU Gene Ontology GO.Ghir.NAU.txt.gz 515 KB 81d9e70a010b1b405278e6559f265eaa
Gossypium hirsutum, BGI Gene Ontology GO.Ghir.BGI.txt.gz 477 KB c080d843a90db40d20a28e3a938dc58e
Gossypium barbadense, NAU Gene Ontology GO.Gbar.NAU.txt.gz 493 KB 52351a970e90dc8e5a0365a66dc700a8
     
Gossypium arboreum, BGI InterPro Assignment InterPro.Garb.BGI.txt.gz 363 KB 23d4e8a27c83e0f68508d12bdd69cdd1
Gossypium raimondii, JGI InterPro Assignment InterPro.Grai.JGI.txt.gz 372 KB 5fc9bb1eff442654125ba01d3639be34
Gossypium raimondii, BGI InterPro Assignment InterPro.Grai.BGI.txt.gz 387 KB 6e47f40c6c2c1e6a0e7a9720c0a8ae9f
Gossypium hirsutum, NAU InterPro Assignment InterPro.Ghir.NAU.txt.gz 682 KB 7f1124079ed6dab54660ee79d8ff1897
Gossypium hirsutum, BGI InterPro Assignment InterPro.Ghir.BGI.txt.gz 626 KB 67904a339a3147016c37c11f82d6b72e
Gossypium barbadense, NAU InterPro Assignment InterPro.Gbar.NAU.txt.gz 688 KB f0240c24cb30a060b46187cae75d7f76
     
Gossypium arboreum, BGI KEGG Pathway pathway.Garb.BGI.txt.gz 115 KB ad9731a44d4daf91e5526c3b65322598
Gossypium raimondii, JGI KEGG Pathway pathway.Grai.JGI.txt.gz 128 KB 8b288b9e4841808f85c34531228f00d9
Gossypium raimondii, BGI KEGG Pathway pathway.Grai.BGI.txt.gz 136 KB 30b4b5dc51f01a314884f82c7a54189c
Gossypium hirsutum, NAU KEGG Pathway pathway.Ghir.NAU.txt.gz 216 KB cd05758a61eec0f9876af0e312166d34
Gossypium hirsutum, BGI KEGG Pathway pathway.Ghir.BGI.txt.gz 192 KB 52638c57e4625ea2e845ad7a68c7f5b7
Gossypium barbadense, NAU KEGG Pathway pathway.Gbar.NAU.txt.gz 168 KB 3924c260d903e8e07e0f07b94167242a

Homology (Tab-delimited Table)

SpeciesData TypeFile NameFile SizeMD5SUM
Gossypium arboreum, BGI Swiss-Prot homology.swissprot.Garb.BGI.txt.gz 458 KB df4e3b8ea1a14c2820deec0e48fffb5f
Gossypium raimondii, JGI Swiss-Prot homology.swissprot.Grai.JGI.txt.gz 444 KB a2ed70a48739e3d2b8dd24c58938ebb6
Gossypium raimondii, BGI Swiss-Prot homology.swissprot.Grai.BGI.txt.gz 431 KB 2e8721a92a870436bcf11a5c64a50abe
Gossypium hirsutum, NAU Swiss-Prot homology.swissprot.Ghir.NAU.txt.gz 807 KB bb09498603f8f5209de5f97ce21bfad1
Gossypium hirsutum, BGI Swiss-Prot homology.swissprot.Ghir.BGI.txt.gz 777 KB 3a9af8fd8648f22d10ab2556bf634990
Gossypium barbadense, NAU Swiss-Prot homology.swissprot.Gbar.NAU.txt.gz 812 KB a18c9b0728fff9fe679c1f1e566f31d7
     
Gossypium arboreum, BGI Paralog homology.paralog.Garb.BGI.txt.gz 558 KB ba6d9d0e5baddafef481a996e0b9ed15
Gossypium raimondii, JGI Paralog homology.paralog.Grai.JGI.txt.gz 546 KB e156a60f3f6892e26cc0b5594c9e7ff8
Gossypium raimondii, BGI Paralog homology.paralog.Grai.BGI.txt.gz 629 KB 3ec1ab3f67c889eeb106fa6e262bf96c
Gossypium hirsutum, NAU Paralog homology.paralog.Ghir.NAU.txt.gz 1.9 MB 8a41935e370a43d57c6dc1a38853c820
Gossypium hirsutum, BGI Paralog homology.paralog.Ghir.BGI.txt.gz 2.0 MB 1042ac2a4860190b3dced396b5e2b358
Gossypium barbadense, NAU Paralog homology.paralog.Gbar.NAU.txt.gz 2.1 MB 4abc8c19350c8164902f8fd29b8c5a9f
     
Gossypium arboreum, BGI Plant Ortholog homology.plantortholog.Garb.BGI.txt.gz 16 MB e1c44f0ae8f371cfad92185c0a6246b9
Gossypium raimondii, JGI Plant Ortholog homology.plantortholog.Grai.JGI.txt.gz 16 MB 8c6be2ebf7b6fecd276dd34d68429c4d
Gossypium raimondii, BGI Plant Ortholog homology.plantortholog.Grai.BGI.txt.gz 16 MB 0970503bab33aa88ae2b51ee18f67e1b
Gossypium hirsutum, NAU Plant Ortholog homology.plantortholog.Ghir.NAU.txt.gz 28 MB 689956f0ab965fa038c2e714b36637b5
Gossypium hirsutum, BGI Plant Ortholog homology.plantortholog.Ghir.BGI.txt.gz 28 MB b9ddcf93669a924290ce7e38a41b5c40
Gossypium barbadense, NAU Plant Ortholog homology.plantortholog.Gbar.NAU.txt.gz 29 MB 87e963452317777ab5b138c80ccd4041

Gene Expression (Tab-delimited Table)

SpeciesData TypeFile NameFile SizeMD5SUM
- Samples sample.sheet.txt.gz 2.3 KB 8e9953851c340a961423d9dd24c158c5
     
Gossypium arboreum, BGI FPKM values fpkm.Garb.BGI.txt.gz 2.3 MB a4b6f15a6973cb2dff6f64f895815c88
Gossypium raimondii, JGI FPKM values fpkm.Grai.JGI.txt.gz 2.5 MB 2d1db196b1bdda790d308f2e18666f2f
Gossypium hirsutum, NAU FPKM values fpkm.Ghir.NAU.txt.gz 29 MB 9509eb2d2a45e126a30cb8c586425a2b
Gossypium barbadense, NAU FPKM values fpkm.Gbar.NAU.txt.gz 11 MB d1905966674b2fe414aa57f5b6428918
     
Gossypium arboreum, BGI Differential Expression diff.Garb.BGI.txt.gz 579 KB fdf4c4cf23e02f07e23f7804f9b80492
Gossypium raimondii, JGI Differential Expression diff.Grai.JGI.txt.gz 391 KB 4976088929763d5f81f771aec653ae3f
Gossypium hirsutum, NAU Differential Expression diff.Ghir.NAU.txt.gz 7.9 MB 99dedbf9782ddcd835fab89f1da01e70
Gossypium barbadense, NAU Differential Expression diff.Gbar.NAU.txt.gz 9.9 MB e583d9242de033eaecc72d6cadc24c00

RNA-seq Assembled Transcripts (GFF3 Format)

SpeciesData TypeFile NameFile SizeMD5SUM
Gossypium arboreum, BGI Cufflinks assembly cufflinks.transcript.Garb.BGI.gff3.gz 5.8 MB 4e40ff5b10be79faa14f2bd10d7df108
Gossypium raimondii, JGI Cufflinks assembly cufflinks.transcript.Grai.JGI.gff3.gz 5.6 MB b6921e322356ccafa50c149ead9e0054
Gossypium hirsutum, NAU Cufflinks assembly cufflinks.transcript.Ghir.NAU.gff3.gz 17 MB e9f7ebdf6bcb80a880db4ceee321e25e
Gossypium barbadense, NAU Cufflinks assembly cufflinks.transcript.Gbar.NAU.gff3.gz 20 MB 4eb96d44410d07d85b66b673c61de123

Genetic Marker Mapping (GFF3 Format)

SpeciesData TypeFile NameFile SizeMD5SUM
Gossypium arboreum, BGI INDELindel.Garb.BGI.gff.gz 9.1 KB bbc7690d7d186f114bcf3e66989b9c86
Gossypium raimondii, JGI INDELindel.Grai.JGI.gff.gz 7.9 KB 2815b2adf0d70566ab8ae4bdbf1078bb
Gossypium raimondii, BGI INDELindel.Grai.BGI.gff.gz 8.2 KB 2022c8d5d6f4493fb2c5129a0ad9ec73
Gossypium hirsutum, NAU INDELindel.Ghir.NAU.gff.gz 17 KB 6f0c45bdadd1ce886f6c53d95c0b814d
Gossypium hirsutum, BGI INDELindel.Ghir.BGI.gff.gz 16 KB 47b5fca9355053519bf33092aa1773a5
Gossypium barbadense, NAU INDELindel.Gbar.NAU.gff.gz 18 KB a593bdf55d4dbc933e12e941e996fb52
     
Gossypium arboreum, BGI RFLPRFLP.Garb.BGI.gff.gz791 KB 8534c5408254dc7ff73509e9fe16d24b
Gossypium raimondii, JGI RFLPRFLP.Grai.JGI.gff.gz315 KB ad47ccbfea28aed5e1bd672bfb18e93e
Gossypium raimondii, BGI RFLPRFLP.Grai.BGI.gff.gz298 KB 4221ed2a8611c8d5f29d6ce716d759f6
Gossypium hirsutum, NAU RFLPRFLP.Ghir.NAU.gff.gz1.7 MB e0307198cc8d084962e17a9ed1425ba5
Gossypium hirsutum, BGI RFLPRFLP.Ghir.BGI.gff.gz2.1 MB a4018175fa34359eb18248ffa1ecedbc
Gossypium barbadense, NAU RFLPRFLP.Gbar.NAU.gff.gz1.2 MB 86c794dc37a47ad6ab907d52ea022b63
     
Gossypium arboreum, BGI SSRSSR.Garb.BGI.gff.gz31 MB 5b3936016fd4d0f6031a4a390fcf4ade
Gossypium raimondii, JGI SSRSSR.Grai.JGI.gff.gz11 MB 5addb284798be17e2d19b848e0e0e1d5
Gossypium raimondii, BGI SSRSSR.Grai.BGI.gff.gz9.4 MB 1dfadff32c74f5f19faa4d422399370c
Gossypium hirsutum, NAU SSRSSR.Ghir.NAU.gff.gz42 MB a0d081a6ce27d0f399668f569d1d96f2
Gossypium hirsutum, BGI SSRSSR.Ghir.BGI.gff.gz44 MB 6f2ebd84bf3ae61eaa4ff1b2fb086e53
Gossypium barbadense, NAU SSRSSR.Gbar.NAU.gff.gz38 MB d14e4fea3e3d96b89a5261c173738890

Population Resequence Variation (Tab-delimited Table)

SpeciesData TypeFile NameFile SizeMD5SUM
Gossypium hirsutum, NAU SNP annotationSNP.annotation.Ghir.NAU.txt.gz 136 MB 79fe16c0384ff98fb9628b3c9ec1a9fe
Gossypium barbadense, NAU SNP annotationSNP.annotation.Gbar.NAU.txt.gz 60 MB 020079bce271dc3d705c5f8224475c2d
     
Gossypium hirsutum, NAU SNP Genotype TableSNP.genotype.Ghir.NAU.txt.gz 317 MB 5807f793b34ffa9959b37e659e716cdb
Gossypium barbadense, NAU SNP Genotype TableSNP.genotype.Gbar.NAU.txt.gz 110 MB f2fd4153088af764aabfd4c23d2488f9